1 HAMP#1
89-159 aa · 71 aa · 18.7% of protein
Raw token
HAMP:89:0.000000000411:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS11915
Histidine kinase, Classic
Eubacterium ramulus · GCF_037068565
ClassHKTypeClassicLength380 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037068565#V8R73_RS11915Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 380 aa (65.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.6% of protein
Raw token
HisKA:164:0.00000000000852:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.7% of protein
Raw token
HATPase_c:272:4.32e-34:380:109:109- Raw architecture: HAMP:89:0.000000000411:159:71:69#HisKA:164:0.00000000000852:230:67:64#HATPase_c:272:4.32e-34:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037068565::NZ_JBAMSF010000019.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94118-95937Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_11915RefSeq proteinWP_021739457.1
Context group ID
GCF_037068565::NZ_JBAMSF010000019.1::G00027Context members
V8R73_RS11910V8R73_RS11915
Partner locus tags
V8R73_RS11910V8R73_RS11915
Partner old locus tags
V8R73_11910V8R73_11915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739457.1Primary protein accession used for annex mappings.
UniProt accessionU2RM97Primary UniProt accession resolved in the annex database.
UniProt IDU2RM97_EUBRADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS11915Primary locus identifier stored in the genes table.
Old locus tagV8R73_11915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000019.1Sequence record reported by the local genomic context database.
Genomic interval94 795-95 937 nt1 143 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span94 118-95 937 ntGCF_037068565::NZ_JBAMSF010000019.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000019.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000019.1All displayed genes belong to this local TCS context.
Neighborhood span94 118-95 937 nt1 820 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 118 nt95 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8R73_RS11910GCF_037068565#V8R73_RS11910
RROmpR
94 118-94 798 nt · Forward (+)
V8R73_RS11915GCF_037068565#V8R73_RS11915
HKClassicCurrent focus
94 795-95 937 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000469345#HMPREF0373_RS09350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2610603
Simplified PFAM architecture for HKOC_2610603
PFAM domain coverage: 171 / 380 aa (45.0%)
1 aa380 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[164-229] | HATPase_c[275-379]
- Domain count: 2
- Matched identifier: HKOC_2610603
- Positioned domains: HisKA 164-229 ; HATPase_c 275-379
Cluster members and taxonomy
Representative gene: GCF_000469345#HMPREF0373_RS09350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key