1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:1.91e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS00080
Response regulator OmpR family
Eubacterium ramulus · GCF_037068565
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037068565#V8R73_RS00080Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:147:5.37e-30:224:78:77- Raw architecture: Response_reg:4:1.91e-28:113:111:111#Trans_reg_C:147:5.37e-30:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037068565::NZ_JBAMSF010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13652-15384Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_00080RefSeq proteinWP_008705965.1
Context group ID
GCF_037068565::NZ_JBAMSF010000001.1::G00001Context members
V8R73_RS00080V8R73_RS00085
Partner locus tags
V8R73_RS00080V8R73_RS00085
Partner old locus tags
V8R73_00080V8R73_00085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008705965.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7GP46Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7GP46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS00080Primary locus identifier stored in the genes table.
Old locus tagV8R73_00080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000001.1Sequence record reported by the local genomic context database.
Genomic interval13 652-14 338 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 652-15 384 ntGCF_037068565::NZ_JBAMSF010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000001.1All displayed genes belong to this local TCS context.
Neighborhood span13 652-15 384 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 652 nt15 384 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8R73_RS00080GCF_037068565#V8R73_RS00080
RROmpRCurrent focus
13 652-14 338 nt · Forward (+)
V8R73_RS00085GCF_037068565#V8R73_RS00085
HKClassic
14 347-15 384 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0121625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304983
Simplified PFAM architecture for RROC_1304983
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1304983
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0121625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key