1 Response_reg#1
5-118 aa · 114 aa · 37.5% of protein
Raw token
Response_reg:5:1.27e-21:118:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS11760
Response regulator, unclassified
Eubacterium ramulus · GCF_037068565
ClassRRTypeunclassifiedLength304 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037068565#V8R73_RS11760Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 304 aa (37.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.27e-21:118:116:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037068565::NZ_JBAMSF010000019.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60057-62943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_11760RefSeq proteinWP_022035199.1
Context group ID
GCF_037068565::NZ_JBAMSF010000019.1::G00026Context members
V8R73_RS11760V8R73_RS11765
Partner locus tags
V8R73_RS11760V8R73_RS11765
Partner old locus tags
V8R73_11760V8R73_11765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022035199.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS11760Primary locus identifier stored in the genes table.
Old locus tagV8R73_11760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000019.1Sequence record reported by the local genomic context database.
Genomic interval60 057-60 971 nt915 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 057-62 943 ntGCF_037068565::NZ_JBAMSF010000019.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000019.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000019.1All displayed genes belong to this local TCS context.
Neighborhood span60 057-62 943 nt2 887 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 057 nt62 943 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8R73_RS11760GCF_037068565#V8R73_RS11760
RRunclassifiedCurrent focus
60 057-60 971 nt · Reverse (-)
V8R73_RS11765GCF_037068565#V8R73_RS11765
HKClassic
61 081-62 943 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_902497045#RDS42_RS11650Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0522876
Simplified PFAM architecture for RROC_0522876
PFAM domain coverage: 113 / 328 aa (34.5%)
1 aa328 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[29-141]
- Domain count: 1
- Matched identifier: RROC_0522876
- Positioned domains: Response_reg 29-141
Cluster members and taxonomy
Representative gene: GCF_902497045#RDS42_RS11650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key