1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.6e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS08000
Response regulator OmpR family
Eubacterium ramulus · GCF_037068565
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037068565#V8R73_RS08000Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 235 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-229 aa · 73 aa · 31.1% of protein
Raw token
Trans_reg_C:157:6.13e-28:229:73:77- Raw architecture: Response_reg:4:3.6e-33:113:111:111#Trans_reg_C:157:6.13e-28:229:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037068565::NZ_JBAMSF010000011.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33986-37428Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_08000RefSeq proteinWP_435387715.1
Context group ID
GCF_037068565::NZ_JBAMSF010000011.1::G00015Context members
V8R73_RS07995V8R73_RS08000
Partner locus tags
V8R73_RS07995V8R73_RS08000
Partner old locus tags
V8R73_07995V8R73_08000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_435387715.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS08000Primary locus identifier stored in the genes table.
Old locus tagV8R73_08000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000011.1Sequence record reported by the local genomic context database.
Genomic interval36 724-37 428 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 986-37 428 ntGCF_037068565::NZ_JBAMSF010000011.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000011.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000011.1All displayed genes belong to this local TCS context.
Neighborhood span33 986-37 428 nt3 443 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 986 nt37 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8R73_RS07995GCF_037068565#V8R73_RS07995
HKClassic
33 986-36 709 nt · Reverse (-)
V8R73_RS08000GCF_037068565#V8R73_RS08000
RROmpRCurrent focus
36 724-37 428 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018784765#GPK66_RS09815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1031194
Simplified PFAM architecture for RROC_1031194
PFAM domain coverage: 183 / 235 aa (77.9%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[157-229]
- Domain count: 2
- Matched identifier: RROC_1031194
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 157-229
Cluster members and taxonomy
Representative gene: GCF_018784765#GPK66_RS09815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key