1 HisKA#1
1-58 aa · 58 aa · 15.6% of protein
Raw token
HisKA:1:0.000000000000273:58:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS07585
Histidine kinase, Hybrid
Eubacterium ramulus · GCF_037068565
ClassHKTypeHybridLength372 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_037068565#V8R73_RS07585Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage293 / 372 aa (78.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
108-225 aa · 118 aa · 31.7% of protein
Raw token
HATPase_c:108:4.78e-27:225:118:1093 Response_reg#3
248-364 aa · 117 aa · 31.5% of protein
Raw token
Response_reg:248:2.78e-27:364:117:111- Raw architecture: HisKA:1:0.000000000000273:58:59:64#HATPase_c:108:4.78e-27:225:118:109#Response_reg:248:2.78e-27:364:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_037068565::NZ_JBAMSF010000008.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span711940-713058Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_07585RefSeq proteinWP_336302963.1
Context group ID
GCF_037068565::NZ_JBAMSF010000008.1::G00013Context members
V8R73_RS07585
Partner locus tags
V8R73_RS07585
Partner old locus tags
V8R73_07585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_336302963.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS07585Primary locus identifier stored in the genes table.
Old locus tagV8R73_07585Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000008.1Sequence record reported by the local genomic context database.
Genomic interval711 940-713 058 nt1 119 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span711 940-713 058 ntGCF_037068565::NZ_JBAMSF010000008.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000008.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000008.1All displayed genes belong to this local TCS context.
Neighborhood span711 940-713 058 nt1 119 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
711 940 nt713 058 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V8R73_RS07585GCF_037068565#V8R73_RS07585
HKHybridCurrent focus
711 940-713 058 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037068565#V8R73_RS07585The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2674197
Simplified PFAM architecture for HKOC_2674197
PFAM domain coverage: 291 / 372 aa (78.2%)
1 aa372 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[1-58] | HATPase_c[109-224] | Response_reg[248-364]
- Domain count: 3
- Matched identifier: HKOC_2674197
- Positioned domains: HisKA 1-58 ; HATPase_c 109-224 ; Response_reg 248-364
Cluster members and taxonomy
Representative gene: GCF_037068565#V8R73_RS07585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key