1 HisKA#1
18-83 aa · 66 aa · 23.9% of protein
Raw token
HisKA:18:1.75e-16:83:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS07400
Histidine kinase, Classic
Eubacterium ramulus · GCF_037068565
ClassHKTypeClassicLength276 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037068565#V8R73_RS07400Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 276 aa (66.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
130-246 aa · 117 aa · 42.4% of protein
Raw token
HATPase_c:130:4.59e-34:246:118:109- Raw architecture: HisKA:18:1.75e-16:83:66:64#HATPase_c:130:4.59e-34:246:118:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037068565::NZ_JBAMSF010000008.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span679801-680983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_07400RefSeq proteinWP_336302949.1
Context group ID
GCF_037068565::NZ_JBAMSF010000008.1::G00012Context members
V8R73_RS07395V8R73_RS07400
Partner locus tags
V8R73_RS07395V8R73_RS07400
Partner old locus tags
V8R73_07395V8R73_07400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_336302949.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS07400Primary locus identifier stored in the genes table.
Old locus tagV8R73_07400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000008.1Sequence record reported by the local genomic context database.
Genomic interval680 153-680 983 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span679 801-680 983 ntGCF_037068565::NZ_JBAMSF010000008.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000008.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000008.1All displayed genes belong to this local TCS context.
Neighborhood span679 801-680 983 nt1 183 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
679 801 nt680 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8R73_RS07395GCF_037068565#V8R73_RS07395
RRCheY
679 801-680 166 nt · Reverse (-)
V8R73_RS07400GCF_037068565#V8R73_RS07400
HKClassicCurrent focus
680 153-680 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037068565#V8R73_RS07400The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2904302
Simplified PFAM architecture for HKOC_2904302
PFAM domain coverage: 182 / 276 aa (65.9%)
1 aa276 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[18-83] | HATPase_c[130-245]
- Domain count: 2
- Matched identifier: HKOC_2904302
- Positioned domains: HisKA 18-83 ; HATPase_c 130-245
Cluster members and taxonomy
Representative gene: GCF_037068565#V8R73_RS07400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key