1 Response_reg#1
3-116 aa · 114 aa · 94.2% of protein
Raw token
Response_reg:3:1.69e-32:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS07395
Response regulator, CheY family
Eubacterium ramulus · GCF_037068565
ClassRRTypeCheYLength121 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_037068565#V8R73_RS07395Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length121 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 121 aa (94.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa121 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.69e-32:116:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_037068565::NZ_JBAMSF010000008.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span679801-680983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_07395RefSeq proteinWP_336302948.1
Context group ID
GCF_037068565::NZ_JBAMSF010000008.1::G00012Context members
V8R73_RS07395V8R73_RS07400
Partner locus tags
V8R73_RS07395V8R73_RS07400
Partner old locus tags
V8R73_07395V8R73_07400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_336302948.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS07395Primary locus identifier stored in the genes table.
Old locus tagV8R73_07395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000008.1Sequence record reported by the local genomic context database.
Genomic interval679 801-680 166 nt366 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span679 801-680 983 ntGCF_037068565::NZ_JBAMSF010000008.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000008.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000008.1All displayed genes belong to this local TCS context.
Neighborhood span679 801-680 983 nt1 183 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
679 801 nt680 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
V8R73_RS07395GCF_037068565#V8R73_RS07395
RRCheYCurrent focus
679 801-680 166 nt · Reverse (-)
V8R73_RS07400GCF_037068565#V8R73_RS07400
HKClassic
680 153-680 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037068565#V8R73_RS07395The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2430811
Simplified PFAM architecture for RROC_2430811
PFAM domain coverage: 113 / 121 aa (93.4%)
1 aa121 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-115]
- Domain count: 1
- Matched identifier: RROC_2430811
- Positioned domains: Response_reg 3-115
Cluster members and taxonomy
Representative gene: GCF_037068565#V8R73_RS07395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key