1 Response_reg#1
1-65 aa · 65 aa · 40.6% of protein
Raw token
Response_reg:1:0.0000161:65:65:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
V8R73_RS04745
Response regulator NarL family
Eubacterium ramulus · GCF_037068565
ClassRRTypeNarLLength160 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_037068565#V8R73_RS04745Stable P2CS identifier used across views.
GenomeGCF_037068565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length160 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage123 / 160 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa160 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
89-146 aa · 58 aa · 36.3% of protein
Raw token
HTH_LUXR:89:0.00000000000000165:146:58:58- Raw architecture: Response_reg:1:0.0000161:65:65:111#HTH_LUXR:89:0.00000000000000165:146:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_037068565::NZ_JBAMSF010000008.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71376-71858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagV8R73_04745RefSeq proteinWP_336302768.1
Context group ID
GCF_037068565::NZ_JBAMSF010000008.1::G00004Context members
V8R73_RS04745
Partner locus tags
V8R73_RS04745
Partner old locus tags
V8R73_04745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_336302768.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagV8R73_RS04745Primary locus identifier stored in the genes table.
Old locus tagV8R73_04745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBAMSF010000008.1Sequence record reported by the local genomic context database.
Genomic interval71 376-71 858 nt483 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 376-71 858 ntGCF_037068565::NZ_JBAMSF010000008.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_037068565::NZ_JBAMSF010000008.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMSF010000008.1All displayed genes belong to this local TCS context.
Neighborhood span71 376-71 858 nt483 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 376 nt71 858 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
V8R73_RS04745GCF_037068565#V8R73_RS04745
RRNarLCurrent focus
71 376-71 858 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037068565#V8R73_RS04745The current gene is the representative for this cluster.
PFAM architectureGerE1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2208690
Simplified PFAM architecture for RROC_2208690
PFAM domain coverage: 52 / 160 aa (32.5%)
1 aa160 aa
GerE
- Simplified architecture: GerE
- Raw architecture: GerE[91-142]
- Domain count: 1
- Matched identifier: RROC_2208690
- Positioned domains: GerE 91-142
Cluster members and taxonomy
Representative gene: GCF_037068565#V8R73_RS04745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 490 · GCF_037068565
AssemblyASM3706856v1 · Contighaploid
Genome composition3 105 303 bp · 43,5% GCEubacterium ramulus
Signal transduction countsGenes 58 · HK 29 · RR 26CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key