1 Response_reg#1
4-113 aa · 110 aa · 43.5% of protein
Raw token
Response_reg:4:2.75e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0J39_RS03230
Response regulator, unclassified
Hungatella effluvii · GCF_034152505
ClassRRTypeunclassifiedLength253 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034152505#U0J39_RS03230Stable P2CS identifier used across views.
GenomeGCF_034152505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 253 aa (55.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
211-241 aa · 31 aa · 12.3% of protein
Raw token
HTH_AraC:211:0.0000000468:241:31:42- Raw architecture: Response_reg:4:2.75e-29:113:111:111#HTH_AraC:211:0.0000000468:241:31:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034152505::NZ_JAWYPQ010000040.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30224-32730Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034152505::NZ_JAWYPQ010000040.1::G00019Context members
U0J39_RS03230U0J39_RS03235
Partner locus tags
U0J39_RS03230U0J39_RS03235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117633700.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P2B0Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P2B0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0J39_RS03230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYPQ010000040.1Sequence record reported by the local genomic context database.
Genomic interval30 224-30 985 nt762 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 224-32 730 ntGCF_034152505::NZ_JAWYPQ010000040.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034152505::NZ_JAWYPQ010000040.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYPQ010000040.1All displayed genes belong to this local TCS context.
Neighborhood span30 224-32 730 nt2 507 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 224 nt32 730 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0J39_RS03230GCF_034152505#U0J39_RS03230
RRunclassifiedCurrent focus
30 224-30 985 nt · Forward (+)
U0J39_RS03235GCF_034152505#U0J39_RS03235
HKClassic
30 982-32 730 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS33550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0697244
Simplified PFAM architecture for RROC_0697244
PFAM domain coverage: 189 / 253 aa (74.7%)
1 aa253 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[164-241]
- Domain count: 2
- Matched identifier: RROC_0697244
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 164-241 ; HTH_18 164-241
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS33550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034152505
AssemblyASM3415250v1 · Scaffoldhaploid
Genome composition7 042 949 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 275 · HK 136 · RR 136CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key