1 Response_reg#1
4-118 aa · 115 aa · 21.5% of protein
Raw token
Response_reg:4:3.09e-24:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0J39_RS00355
Response regulator, unclassified
Hungatella effluvii · GCF_034152505
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034152505#U0J39_RS00355Stable P2CS identifier used across views.
GenomeGCF_034152505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 534 aa (34.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-478 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:438:0.00000000309:478:41:423 HTH_AraC#3
499-527 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:499:0.000000252:527:29:42- Raw architecture: Response_reg:4:3.09e-24:118:115:111#HTH_AraC:438:0.00000000309:478:41:42#HTH_AraC:499:0.000000252:527:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034152505::NZ_JAWYPQ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span69914-73352Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034152505::NZ_JAWYPQ010000001.1::G00002Context members
U0J39_RS00350U0J39_RS00355
Partner locus tags
U0J39_RS00350U0J39_RS00355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002604188.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P7F3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P7F3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0J39_RS00355Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYPQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval71 748-73 352 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span69 914-73 352 ntGCF_034152505::NZ_JAWYPQ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034152505::NZ_JAWYPQ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYPQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span69 914-73 352 nt3 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
69 914 nt73 352 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0J39_RS00350GCF_034152505#U0J39_RS00350
HKClassic
69 914-71 719 nt · Forward (+)
U0J39_RS00355GCF_034152505#U0J39_RS00355
RRunclassifiedCurrent focus
71 748-73 352 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS22040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0102981
Simplified PFAM architecture for RROC_0102981
PFAM domain coverage: 171 / 534 aa (32.0%)
1 aa534 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-106] | HTH_AraC[439-478] | HTH_AraC[499-526]
- Domain count: 3
- Matched identifier: RROC_0102981
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106 ; HTH_AraC 439-478 ; HTH_AraC 439-478 ; HTH_AraC 499-526 ; HTH_AraC 499-526
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS22040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034152505
AssemblyASM3415250v1 · Scaffoldhaploid
Genome composition7 042 949 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 275 · HK 136 · RR 136CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key