1 HAMP#1
308-375 aa · 68 aa · 11.6% of protein
Raw token
HAMP:308:0.0000000000168:375:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0J39_RS00940
Histidine kinase, Classic
Hungatella effluvii · GCF_034152505
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034152505#U0J39_RS00940Stable P2CS identifier used across views.
GenomeGCF_034152505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 586 aa (41.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation3 items
2 His_kinase#2
392-471 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:392:1.03e-31:471:80:803 HATPase_c#3
490-585 aa · 96 aa · 16.4% of protein
Raw token
HATPase_c:490:0.0000000000000152:585:109:109- Raw architecture: HAMP:308:0.0000000000168:375:68:69#His_kinase:392:1.03e-31:471:80:80#HATPase_c:490:0.0000000000000152:585:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034152505::NZ_JAWYPQ010000009.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1256-4280Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034152505::NZ_JAWYPQ010000009.1::G00004Context members
U0J39_RS00940U0J39_RS00945
Partner locus tags
U0J39_RS00940U0J39_RS00945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632887.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PBQ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PBQ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0J39_RS00940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYPQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval1 256-3 016 nt1 761 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 256-4 280 ntGCF_034152505::NZ_JAWYPQ010000009.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034152505::NZ_JAWYPQ010000009.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYPQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span1 256-4 280 nt3 025 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 256 nt4 280 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0J39_RS00940GCF_034152505#U0J39_RS00940
HKClassicCurrent focus
1 256-3 016 nt · Reverse (-)
U0J39_RS00945GCF_034152505#U0J39_RS00945
RRunclassified
3 003-4 280 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466285#DXD79_RS05135Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132409
Simplified PFAM architecture for HKOC_1132409
PFAM domain coverage: 223 / 586 aa (38.1%)
1 aa586 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[325-375] | His_kinase[393-469] | HATPase_c[490-584]
- Domain count: 3
- Matched identifier: HKOC_1132409
- Positioned domains: HAMP 325-375 ; His_kinase 393-469 ; HATPase_c 490-584
Cluster members and taxonomy
Representative gene: GCF_003466285#DXD79_RS05135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034152505
AssemblyASM3415250v1 · Scaffoldhaploid
Genome composition7 042 949 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 275 · HK 136 · RR 136CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key