1 Response_reg#1
4-113 aa · 110 aa · 94.8% of protein
Raw token
Response_reg:4:7.4e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0J39_RS02475
Response regulator, CheY family
Hungatella effluvii · GCF_034152505
ClassRRTypeCheYLength116 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034152505#U0J39_RS02475Stable P2CS identifier used across views.
GenomeGCF_034152505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length116 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 116 aa (94.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa116 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:7.4e-34:113:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034152505::NZ_JAWYPQ010000032.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26554-28394Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034152505::NZ_JAWYPQ010000032.1::G00014Context members
U0J39_RS02475U0J39_RS02480
Partner locus tags
U0J39_RS02475U0J39_RS02480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321025532.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0J39_RS02475Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYPQ010000032.1Sequence record reported by the local genomic context database.
Genomic interval26 554-26 901 nt348 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 554-28 394 ntGCF_034152505::NZ_JAWYPQ010000032.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034152505::NZ_JAWYPQ010000032.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYPQ010000032.1All displayed genes belong to this local TCS context.
Neighborhood span26 554-28 394 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 554 nt28 394 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0J39_RS02475GCF_034152505#U0J39_RS02475
RRCheYCurrent focus
26 554-26 901 nt · Reverse (-)
U0J39_RS02480GCF_034152505#U0J39_RS02480
HKClassic
26 898-28 394 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS26335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1248837
Simplified PFAM architecture for RROC_1248837
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1248837
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS26335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034152505
AssemblyASM3415250v1 · Scaffoldhaploid
Genome composition7 042 949 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 275 · HK 136 · RR 136CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key