1 dCache_1#1
1-234 aa · 234 aa · 43.4% of protein
Raw token
dCache_1:1:0.00000103:234:248:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0J39_RS01095
Histidine kinase, Classic
Hungatella effluvii · GCF_034152505
ClassHKTypeClassicLength539 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034152505#U0J39_RS01095Stable P2CS identifier used across views.
GenomeGCF_034152505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length539 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage491 / 539 aa (91.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa539 aa
Domain-by-domain annotation4 items
2 HAMP#2
253-322 aa · 70 aa · 13.0% of protein
Raw token
HAMP:253:0.000000000408:322:70:693 His_kinase#3
337-416 aa · 80 aa · 14.8% of protein
Raw token
His_kinase:337:2.29e-28:416:80:804 HATPase_c#4
433-539 aa · 107 aa · 19.9% of protein
Raw token
HATPase_c:433:0.00000000999:539:110:109- Raw architecture: dCache_1:1:0.00000103:234:248:195#HAMP:253:0.000000000408:322:70:69#His_kinase:337:2.29e-28:416:80:80#HATPase_c:433:0.00000000999:539:110:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034152505::NZ_JAWYPQ010000010.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17161-20356Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034152505::NZ_JAWYPQ010000010.1::G00005Context members
U0J39_RS01095U0J39_RS01100
Partner locus tags
U0J39_RS01095U0J39_RS01100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321025488.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0J39_RS01095Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYPQ010000010.1Sequence record reported by the local genomic context database.
Genomic interval17 161-18 782 nt1 622 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 161-20 356 ntGCF_034152505::NZ_JAWYPQ010000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034152505::NZ_JAWYPQ010000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYPQ010000010.1All displayed genes belong to this local TCS context.
Neighborhood span17 161-20 356 nt3 196 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 161 nt20 356 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0J39_RS01095GCF_034152505#U0J39_RS01095
HKClassicCurrent focus
17 161-18 782 nt · Forward (+)
U0J39_RS01100GCF_034152505#U0J39_RS01100
RRunclassified
18 815-20 356 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034152505#U0J39_RS01095The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1325857
Simplified PFAM architecture for HKOC_1325857
PFAM domain coverage: 180 / 539 aa (33.4%)
1 aa539 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[337-414] | HATPase_c[434-535]
- Domain count: 2
- Matched identifier: HKOC_1325857
- Positioned domains: His_kinase 337-414 ; HATPase_c 434-535
Cluster members and taxonomy
Representative gene: GCF_034152505#U0J39_RS01095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034152505
AssemblyASM3415250v1 · Scaffoldhaploid
Genome composition7 042 949 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 275 · HK 136 · RR 136CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key