1 HisKA#1
182-248 aa · 67 aa · 16.5% of protein
Raw token
HisKA:182:1.9e-16:248:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0J39_RS00770
Histidine kinase, Classic
Hungatella effluvii · GCF_034152505
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034152505#U0J39_RS00770Stable P2CS identifier used across views.
GenomeGCF_034152505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 405 aa (44.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
295-405 aa · 111 aa · 27.4% of protein
Raw token
HATPase_c:295:0.0000000000000212:405:112:109- Raw architecture: HisKA:182:1.9e-16:248:67:64#HATPase_c:295:0.0000000000000212:405:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034152505::NZ_JAWYPQ010000007.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4297-6200Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034152505::NZ_JAWYPQ010000007.1::G00003Context members
U0J39_RS00765U0J39_RS00770
Partner locus tags
U0J39_RS00765U0J39_RS00770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630309.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PDH4Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PDH4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0J39_RS00770Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYPQ010000007.1Sequence record reported by the local genomic context database.
Genomic interval4 983-6 200 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 297-6 200 ntGCF_034152505::NZ_JAWYPQ010000007.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034152505::NZ_JAWYPQ010000007.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYPQ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span4 297-6 200 nt1 904 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 297 nt6 200 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0J39_RS00765GCF_034152505#U0J39_RS00765
RROmpR
4 297-4 986 nt · Forward (+)
U0J39_RS00770GCF_034152505#U0J39_RS00770
HKClassicCurrent focus
4 983-6 200 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS02235Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2399373
Simplified PFAM architecture for HKOC_2399373
PFAM domain coverage: 172 / 405 aa (42.5%)
1 aa405 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[183-248] | HATPase_c[295-400]
- Domain count: 2
- Matched identifier: HKOC_2399373
- Positioned domains: HisKA 183-248 ; HATPase_c 295-400
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS02235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034152505
AssemblyASM3415250v1 · Scaffoldhaploid
Genome composition7 042 949 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 275 · HK 136 · RR 136CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key