1 H_kinase_N#1
24-142 aa · 119 aa · 24.9% of protein
Raw token
H_kinase_N:24:2.9e-16:142:122:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS18505
Histidine kinase, Classic
Hungatella effluvii · GCF_034129085
ClassHKTypeClassicLength478 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034129085#U0C29_RS18505Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length478 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage377 / 478 aa (78.9%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa478 aa
Domain-by-domain annotation4 items
2 PAS_4#2
174-269 aa · 96 aa · 20.1% of protein
Raw token
PAS_4:174:0.000000776:269:107:1103 HisKA_2#3
287-361 aa · 75 aa · 15.7% of protein
Raw token
HisKA_2:287:0.00000000000000644:361:76:764 HATPase_c#4
390-476 aa · 87 aa · 18.2% of protein
Raw token
HATPase_c:390:0.00000000000000927:476:102:109- Raw architecture: H_kinase_N:24:2.9e-16:142:122:139#PAS_4:174:0.000000776:269:107:110#HisKA_2:287:0.00000000000000644:361:76:76#HATPase_c:390:0.00000000000000927:476:102:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034129085::NZ_JAWYNG010000403.1::G00096
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2238-4357Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000403.1::G00096Context members
U0C29_RS18500U0C29_RS18505
Partner locus tags
U0C29_RS18500U0C29_RS18505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320933567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS18505Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000403.1Sequence record reported by the local genomic context database.
Genomic interval2 921-4 357 nt1 437 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 238-4 357 ntGCF_034129085::NZ_JAWYNG010000403.1::G00096
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000403.1::G00096Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000403.1All displayed genes belong to this local TCS context.
Neighborhood span2 238-4 357 nt2 120 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 238 nt4 357 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C29_RS18500GCF_034129085#U0C29_RS18500
RRAmiR_NasR
2 238-2 813 nt · Forward (+)
U0C29_RS18505GCF_034129085#U0C29_RS18505
HKClassicCurrent focus
2 921-4 357 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS18505The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + PAS_8 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1642422
Simplified PFAM architecture for HKOC_1642422
PFAM domain coverage: 340 / 478 aa (71.1%)
1 aa478 aa
GAF_PdtaSPAS_8HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_8 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[20-143] | PAS_8[168-220] | HisKA_2[287-359] | HATPase_c[386-475]
- Domain count: 4
- Matched identifier: HKOC_1642422
- Positioned domains: GAF_PdtaS 20-143 ; PAS_8 168-220 ; HisKA_2 287-359 ; HATPase_c 386-475
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS18505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key