1 dCache_1#1
44-267 aa · 224 aa · 37.5% of protein
Raw token
dCache_1:44:0.00000102:267:232:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C29_RS01270
Histidine kinase, Classic
Hungatella effluvii · GCF_034129085
ClassHKTypeClassicLength597 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034129085#U0C29_RS01270Stable P2CS identifier used across views.
GenomeGCF_034129085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length597 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage483 / 597 aa (80.9%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa597 aa
Domain-by-domain annotation4 items
2 HAMP#2
287-356 aa · 70 aa · 11.7% of protein
Raw token
HAMP:287:0.00000000000127:356:70:693 His_kinase#3
379-457 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:379:3.59e-25:457:79:804 HATPase_c#4
476-585 aa · 110 aa · 18.4% of protein
Raw token
HATPase_c:476:0.000000000000395:585:110:109- Raw architecture: dCache_1:44:0.00000102:267:232:195#HAMP:287:0.00000000000127:356:70:69#His_kinase:379:3.59e-25:457:79:80#HATPase_c:476:0.000000000000395:585:110:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034129085::NZ_JAWYNG010000024.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9366-12209Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034129085::NZ_JAWYNG010000024.1::G00005Context members
U0C29_RS01265U0C29_RS01270
Partner locus tags
U0C29_RS01265U0C29_RS01270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320932180.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C29_RS01270Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYNG010000024.1Sequence record reported by the local genomic context database.
Genomic interval10 416-12 209 nt1 794 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 366-12 209 ntGCF_034129085::NZ_JAWYNG010000024.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034129085::NZ_JAWYNG010000024.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYNG010000024.1All displayed genes belong to this local TCS context.
Neighborhood span9 366-12 209 nt2 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 366 nt12 209 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C29_RS01265GCF_034129085#U0C29_RS01265
RRunclassified
9 366-10 409 nt · Reverse (-)
U0C29_RS01270GCF_034129085#U0C29_RS01270
HKClassicCurrent focus
10 416-12 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS01270The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1072035
Simplified PFAM architecture for HKOC_1072035
PFAM domain coverage: 239 / 597 aa (40.0%)
1 aa597 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[304-355] | His_kinase[379-456] | HATPase_c[476-584]
- Domain count: 3
- Matched identifier: HKOC_1072035
- Positioned domains: HAMP 304-355 ; His_kinase 379-456 ; HATPase_c 476-584
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS01270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034129085
AssemblyASM3412908v1 · Scaffoldhaploid
Genome composition7 121 632 bp · 49,5% GCHungatella effluvii
Signal transduction countsGenes 289 · HK 136 · RR 146CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key