1 dCache_1#1
184-293 aa · 110 aa · 18.5% of protein
Raw token
dCache_1:184:0.0000000835:293:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS18280
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS18280Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage364 / 594 aa (61.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
311-377 aa · 67 aa · 11.3% of protein
Raw token
HAMP:311:0.00000000503:377:67:693 His_kinase#3
394-473 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:394:1.21e-28:473:80:804 HATPase_c#4
485-591 aa · 107 aa · 18.0% of protein
Raw token
HATPase_c:485:1.2e-17:591:114:109- Raw architecture: dCache_1:184:0.0000000835:293:113:195#HAMP:311:0.00000000503:377:67:69#His_kinase:394:1.21e-28:473:80:80#HATPase_c:485:1.2e-17:591:114:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000041.1::G00080
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span267531-270837Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000041.1::G00080Context members
U0C54_RS18275U0C54_RS18280
Partner locus tags
U0C54_RS18275U0C54_RS18280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029465588.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS18280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000041.1Sequence record reported by the local genomic context database.
Genomic interval269 053-270 837 nt1 785 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span267 531-270 837 ntGCF_034124445::NZ_JAWYBC010000041.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000041.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000041.1All displayed genes belong to this local TCS context.
Neighborhood span267 531-270 837 nt3 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
267 531 nt270 837 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS18275GCF_034124445#U0C54_RS18275
RRunclassified
267 531-269 069 nt · Forward (+)
U0C54_RS18280GCF_034124445#U0C54_RS18280
HKClassicCurrent focus
269 053-270 837 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124445#U0C54_RS18280The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1090990
Simplified PFAM architecture for HKOC_1090990
PFAM domain coverage: 428 / 594 aa (72.1%)
1 aa594 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-292] | His_kinase[395-473] | HATPase_c[488-592]
- Domain count: 3
- Matched identifier: HKOC_1090990
- Positioned domains: dCache_1 49-292 ; His_kinase 395-473 ; HATPase_c 488-592
Cluster members and taxonomy
Representative gene: GCF_034124445#U0C54_RS18280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key