1 Response_reg#1
5-108 aa · 104 aa · 44.4% of protein
Raw token
Response_reg:5:0.00000158:108:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS01700
Response regulator OmpR family
Hungatella effluvii · GCF_034124445
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124445#U0C54_RS01700Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:151:2.02e-31:227:77:77- Raw architecture: Response_reg:5:0.00000158:108:110:111#Trans_reg_C:151:2.02e-31:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124445::NZ_JAWYBC010000004.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span59298-60002Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000004.1::G00006Context members
U0C54_RS01700
Partner locus tags
U0C54_RS01700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_039891402.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS01700Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000004.1Sequence record reported by the local genomic context database.
Genomic interval59 298-60 002 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 298-60 002 ntGCF_034124445::NZ_JAWYBC010000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span59 298-60 002 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 298 nt60 002 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0C54_RS01700GCF_034124445#U0C54_RS01700
RROmpRCurrent focus
59 298-60 002 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034129085#U0C29_RS18140Use this link to inspect the representative gene detail.
PFAM architectureTrans_reg_C1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0856466
Simplified PFAM architecture for RROC_0856466
PFAM domain coverage: 77 / 242 aa (31.8%)
1 aa242 aa
Trans_reg_C
- Simplified architecture: Trans_reg_C
- Raw architecture: Trans_reg_C[159-235]
- Domain count: 1
- Matched identifier: RROC_0856466
- Positioned domains: Trans_reg_C 159-235
Cluster members and taxonomy
Representative gene: GCF_034129085#U0C29_RS18140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key