1 HAMP#1
290-359 aa · 70 aa · 12.0% of protein
Raw token
HAMP:290:0.000000000000306:359:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS11830
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS11830Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 582 aa (41.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation3 items
2 His_kinase#2
376-447 aa · 72 aa · 12.4% of protein
Raw token
His_kinase:376:2.06e-28:447:72:803 HATPase_c#3
469-567 aa · 99 aa · 17.0% of protein
Raw token
HATPase_c:469:0.0000000162:567:109:109- Raw architecture: HAMP:290:0.000000000000306:359:70:69#His_kinase:376:2.06e-28:447:72:80#HATPase_c:469:0.0000000162:567:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000020.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span128479-130945Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000020.1::G00061Context members
U0C54_RS11830U0C54_RS11835
Partner locus tags
U0C54_RS11830U0C54_RS11835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_279018472.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS11830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000020.1Sequence record reported by the local genomic context database.
Genomic interval128 479-130 227 nt1 749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 479-130 945 ntGCF_034124445::NZ_JAWYBC010000020.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000020.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000020.1All displayed genes belong to this local TCS context.
Neighborhood span128 479-130 945 nt2 467 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 479 nt130 945 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS11830GCF_034124445#U0C54_RS11830
HKClassicCurrent focus
128 479-130 227 nt · Forward (+)
U0C54_RS11835GCF_034124445#U0C54_RS11835
RRunclassified
130 202-130 945 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124445#U0C54_RS11830The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1155104
Simplified PFAM architecture for HKOC_1155104
PFAM domain coverage: 223 / 582 aa (38.3%)
1 aa582 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[307-358] | His_kinase[376-448] | HATPase_c[470-567]
- Domain count: 3
- Matched identifier: HKOC_1155104
- Positioned domains: HAMP 307-358 ; His_kinase 376-448 ; HATPase_c 470-567
Cluster members and taxonomy
Representative gene: GCF_034124445#U0C54_RS11830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key