1 HAMP#1
298-363 aa · 66 aa · 11.0% of protein
Raw token
HAMP:298:0.000000000001:363:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0C54_RS05580
Histidine kinase, Classic
Hungatella effluvii · GCF_034124445
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124445#U0C54_RS05580Stable P2CS identifier used across views.
GenomeGCF_034124445Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 600 aa (41.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-459 aa · 78 aa · 13.0% of protein
Raw token
His_kinase:382:7.54e-33:459:78:803 HATPase_c#3
479-585 aa · 107 aa · 17.8% of protein
Raw token
HATPase_c:479:0.00000000000000371:585:107:109- Raw architecture: HAMP:298:0.000000000001:363:66:69#His_kinase:382:7.54e-33:459:78:80#HATPase_c:479:0.00000000000000371:585:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124445::NZ_JAWYBC010000008.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132350-135683Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124445::NZ_JAWYBC010000008.1::G00027Context members
U0C54_RS05580U0C54_RS05585
Partner locus tags
U0C54_RS05580U0C54_RS05585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466388.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DP92Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DP92_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0C54_RS05580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYBC010000008.1Sequence record reported by the local genomic context database.
Genomic interval132 350-134 152 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 350-135 683 ntGCF_034124445::NZ_JAWYBC010000008.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124445::NZ_JAWYBC010000008.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYBC010000008.1All displayed genes belong to this local TCS context.
Neighborhood span132 350-135 683 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 350 nt135 683 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0C54_RS05580GCF_034124445#U0C54_RS05580
HKClassicCurrent focus
132 350-134 152 nt · Reverse (-)
U0C54_RS05585GCF_034124445#U0C54_RS05585
RRunclassified
134 133-135 683 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS09445Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053589
Simplified PFAM architecture for HKOC_1053589
PFAM domain coverage: 236 / 600 aa (39.3%)
1 aa600 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-363] | His_kinase[381-458] | HATPase_c[477-586]
- Domain count: 3
- Matched identifier: HKOC_1053589
- Positioned domains: HAMP 316-363 ; His_kinase 381-458 ; HATPase_c 477-586
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS09445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124445
AssemblyASM3412444v1 · Scaffoldhaploid
Genome composition7 244 608 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 269 · HK 131 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key