1 HAMP#1
298-363 aa · 66 aa · 11.0% of protein
Raw token
HAMP:298:0.000000000001:363:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX31_RS09445
Histidine kinase, Classic
Hungatella hathewayi · GCF_003435045
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435045#DWX31_RS09445Stable P2CS identifier used across views.
GenomeGCF_003435045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 600 aa (41.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-459 aa · 78 aa · 13.0% of protein
Raw token
His_kinase:382:7.54e-33:459:78:803 HATPase_c#3
479-585 aa · 107 aa · 17.8% of protein
Raw token
HATPase_c:479:0.00000000000000371:585:107:109- Raw architecture: HAMP:298:0.000000000001:363:66:69#His_kinase:382:7.54e-33:459:78:80#HATPase_c:479:0.00000000000000371:585:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435045::NZ_QTJW01000005.1::G00130
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span325240-328573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX31_09435RefSeq proteinWP_029466388.1
Context group ID
GCF_003435045::NZ_QTJW01000005.1::G00130Context members
DWX31_RS09445DWX31_RS09450
Partner locus tags
DWX31_RS09445DWX31_RS09450
Partner old locus tags
DWX31_09435DWX31_09440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029466388.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DP92Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DP92_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX31_RS09445Primary locus identifier stored in the genes table.
Old locus tagDWX31_09435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QTJW01000005.1Sequence record reported by the local genomic context database.
Genomic interval325 240-327 042 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span325 240-328 573 ntGCF_003435045::NZ_QTJW01000005.1::G00130
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435045::NZ_QTJW01000005.1::G00130Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QTJW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span325 240-328 573 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
325 240 nt328 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX31_RS09445GCF_003435045#DWX31_RS09445
HKClassicCurrent focus
325 240-327 042 nt · Reverse (-)
DWX31_RS09450GCF_003435045#DWX31_RS09450
RRunclassified
327 023-328 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS09445The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053589
Simplified PFAM architecture for HKOC_1053589
PFAM domain coverage: 236 / 600 aa (39.3%)
1 aa600 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-363] | His_kinase[381-458] | HATPase_c[477-586]
- Domain count: 3
- Matched identifier: HKOC_1053589
- Positioned domains: HAMP 316-363 ; His_kinase 381-458 ; HATPase_c 477-586
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS09445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 154 046 · GCF_003435045
AssemblyASM343504v1 · Scaffoldhaploid
Genome composition7 421 149 bp · 49,0% GCHungatella hathewayi
Signal transduction countsGenes 276 · HK 134 · RR 138CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key