1 Response_reg#1
15-125 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:15:5.49e-29:125:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS908_RS06105
Response regulator OmpR family
Bifidobacterium longum · GCF_033657985
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033657985#RS908_RS06105Stable P2CS identifier used across views.
GenomeGCF_033657985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 235 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-234 aa · 71 aa · 30.2% of protein
Raw token
Trans_reg_C:164:3.27e-16:234:75:77- Raw architecture: Response_reg:15:5.49e-29:125:111:111#Trans_reg_C:164:3.27e-16:234:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033657985::NZ_JAWWQM010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1355780-1357980Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657985::NZ_JAWWQM010000001.1::G00009Context members
RS908_RS06105RS908_RS06110
Partner locus tags
RS908_RS06105RS908_RS06110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236822729.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS908_RS06105Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQM010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 355 780-1 356 487 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 355 780-1 357 980 ntGCF_033657985::NZ_JAWWQM010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657985::NZ_JAWWQM010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 355 780-1 357 980 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 355 780 nt1 357 980 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS908_RS06105GCF_033657985#RS908_RS06105
RROmpRCurrent focus
1 355 780-1 356 487 nt · Forward (+)
RS908_RS06110GCF_033657985#RS908_RS06110
HKClassic
1 356 484-1 357 980 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS06105The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1037058
Simplified PFAM architecture for RROC_1037058
PFAM domain coverage: 182 / 235 aa (77.4%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[15-125] | Trans_reg_C[164-234]
- Domain count: 2
- Matched identifier: RROC_1037058
- Positioned domains: Response_reg 15-125 ; Trans_reg_C 164-234
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS06105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657985
AssemblyASM3365798v1 · Contighaploid
Genome composition2 395 492 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key