1 Response_reg#1
11-124 aa · 114 aa · 51.6% of protein
Raw token
Response_reg:11:0.00000000000000947:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS908_RS04145
Response regulator NarL family
Bifidobacterium longum · GCF_033657985
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033657985#RS908_RS04145Stable P2CS identifier used across views.
GenomeGCF_033657985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 221 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-214 aa · 57 aa · 25.8% of protein
Raw token
HTH_LUXR:158:0.000000000000021:214:57:58- Raw architecture: Response_reg:11:0.00000000000000947:124:114:111#HTH_LUXR:158:0.000000000000021:214:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033657985::NZ_JAWWQM010000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span966970-967635Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_033657985::NZ_JAWWQM010000001.1::G00005Context members
RS908_RS04145
Partner locus tags
RS908_RS04145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_143882145.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS908_RS04145Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWWQM010000001.1Sequence record reported by the local genomic context database.
Genomic interval966 970-967 635 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span966 970-967 635 ntGCF_033657985::NZ_JAWWQM010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033657985::NZ_JAWWQM010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWWQM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span966 970-967 635 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
966 970 nt967 635 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS908_RS04145GCF_033657985#RS908_RS04145
RRNarLCurrent focus
966 970-967 635 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033657985#RS908_RS04145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1704565
Simplified PFAM architecture for RROC_1704565
PFAM domain coverage: 166 / 221 aa (75.1%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[161-213]
- Domain count: 2
- Matched identifier: RROC_1704565
- Positioned domains: Response_reg 11-123 ; GerE 161-213
Cluster members and taxonomy
Representative gene: GCF_033657985#RS908_RS04145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033657985
AssemblyASM3365798v1 · Contighaploid
Genome composition2 395 492 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 29 · HK 11 · RR 16CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key