1 Response_reg#1
27-134 aa · 108 aa · 46.4% of protein
Raw token
Response_reg:27:6.49e-17:134:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS929_RS00980
Response regulator NarL family
Bifidobacterium longum · GCF_033344535
ClassRRTypeNarLLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_033344535#RS929_RS00980Stable P2CS identifier used across views.
GenomeGCF_033344535Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 233 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
173-226 aa · 54 aa · 23.2% of protein
Raw token
HTH_LUXR:173:0.000000000443:226:54:58- Raw architecture: Response_reg:27:6.49e-17:134:108:111#HTH_LUXR:173:0.000000000443:226:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_033344535::NZ_JAWLQZ010000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span217917-218618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS929_00980RefSeq proteinWP_318155987.1
Context group ID
GCF_033344535::NZ_JAWLQZ010000001.1::G00007Context members
RS929_RS00980
Partner locus tags
RS929_RS00980
Partner old locus tags
RS929_00980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_318155987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS929_RS00980Primary locus identifier stored in the genes table.
Old locus tagRS929_00980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLQZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval217 917-218 618 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span217 917-218 618 ntGCF_033344535::NZ_JAWLQZ010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344535::NZ_JAWLQZ010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLQZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span217 917-218 618 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
217 917 nt218 618 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RS929_RS00980GCF_033344535#RS929_RS00980
RRNarLCurrent focus
217 917-218 618 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_033344535#RS929_RS00980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1106249
Simplified PFAM architecture for RROC_1106249
PFAM domain coverage: 161 / 233 aa (69.1%)
1 aa233 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[27-133] | GerE[172-225]
- Domain count: 2
- Matched identifier: RROC_1106249
- Positioned domains: Response_reg 27-133 ; GerE 172-225
Cluster members and taxonomy
Representative gene: GCF_033344535#RS929_RS00980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344535
AssemblyASM3334453v1 · Contighaploid
Genome composition2 586 656 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key