1 Response_reg#1
9-146 aa · 138 aa · 46.6% of protein
Raw token
Response_reg:9:1.4e-27:146:138:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RS929_RS00360
Response regulator NarL family
Bifidobacterium longum · GCF_033344535
ClassRRTypeNarLLength296 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_033344535#RS929_RS00360Stable P2CS identifier used across views.
GenomeGCF_033344535Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length296 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 296 aa (66.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
233-290 aa · 58 aa · 19.6% of protein
Raw token
HTH_LUXR:233:8.04e-25:290:58:58- Raw architecture: Response_reg:9:1.4e-27:146:138:111#HTH_LUXR:233:8.04e-25:290:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_033344535::NZ_JAWLQZ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73285-76661Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRS929_00360RefSeq proteinWP_071478404.1
Context group ID
GCF_033344535::NZ_JAWLQZ010000001.1::G00002Context members
RS929_RS00355RS929_RS00360
Partner locus tags
RS929_RS00355RS929_RS00360
Partner old locus tags
RS929_00355RS929_00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_071478404.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRS929_RS00360Primary locus identifier stored in the genes table.
Old locus tagRS929_00360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWLQZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval75 771-76 661 nt891 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 285-76 661 ntGCF_033344535::NZ_JAWLQZ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_033344535::NZ_JAWLQZ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWLQZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span73 285-76 661 nt3 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 285 nt76 661 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RS929_RS00355GCF_033344535#RS929_RS00355
HKClassic
73 285-75 687 nt · Forward (+)
RS929_RS00360GCF_033344535#RS929_RS00360
RRNarLCurrent focus
75 771-76 661 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001870755#BFS25_RS08000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0580371
Simplified PFAM architecture for RROC_0580371
PFAM domain coverage: 126 / 296 aa (42.6%)
1 aa296 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-78] | GerE[235-290]
- Domain count: 2
- Matched identifier: RROC_0580371
- Positioned domains: Response_reg 9-78 ; Response_reg 9-78 ; GerE 235-290 ; GerE 235-290
Cluster members and taxonomy
Representative gene: GCF_001870755#BFS25_RS08000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_033344535
AssemblyASM3334453v1 · Contighaploid
Genome composition2 586 656 bp · 59,5% GCBifidobacterium longum
Signal transduction countsGenes 41 · HK 14 · RR 23CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key