1 HisKA_3#1
176-244 aa · 69 aa · 18.4% of protein
Raw token
HisKA_3:176:5.21e-16:244:69:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS13980
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength374 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS13980Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length374 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 374 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa374 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
284-374 aa · 91 aa · 24.3% of protein
Raw token
HATPase_c:284:0.00000000000000152:374:106:109- Raw architecture: HisKA_3:176:5.21e-16:244:69:68#HATPase_c:284:0.00000000000000152:374:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000003.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span211199-213116Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_13990RefSeq proteinWP_323467091.1
Context group ID
GCF_032843305::NZ_JAWJAY010000003.1::G00031Context members
RYX45_RS13975RYX45_RS13980
Partner locus tags
RYX45_RS13975RYX45_RS13980
Partner old locus tags
RYX45_13985RYX45_13990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323467091.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NPQ3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NPQ3_ALKPSDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS13980Primary locus identifier stored in the genes table.
Old locus tagRYX45_13990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000003.1Sequence record reported by the local genomic context database.
Genomic interval211 992-213 116 nt1 125 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span211 199-213 116 ntGCF_032843305::NZ_JAWJAY010000003.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000003.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span211 199-213 116 nt1 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
211 199 nt213 116 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS13975GCF_032843305#RYX45_RS13975
RRNarL
211 199-211 900 nt · Reverse (-)
RYX45_RS13980GCF_032843305#RYX45_RS13980
HKClassicCurrent focus
211 992-213 116 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS13980The current gene is the representative for this cluster.
PFAM architectureDegS + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2661407
Simplified PFAM architecture for HKOC_2661407
PFAM domain coverage: 318 / 374 aa (85.0%)
1 aa374 aa
DegSHisKA_3HATPase_c
- Simplified architecture: DegS + HisKA_3 + HATPase_c
- Raw architecture: DegS[8-166] | HisKA_3[176-244] | HATPase_c[284-373]
- Domain count: 3
- Matched identifier: HKOC_2661407
- Positioned domains: DegS 8-166 ; HisKA_3 176-244 ; HATPase_c 284-373
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS13980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key