1 HAMP#1
10-79 aa · 70 aa · 22.9% of protein
Raw token
HAMP:10:0.000000000236:79:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS01240
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS01240Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 306 aa (78.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation3 items
2 HisKA#2
84-144 aa · 61 aa · 19.9% of protein
Raw token
HisKA:84:0.0000000000000111:144:61:643 HATPase_c#3
197-304 aa · 108 aa · 35.3% of protein
Raw token
HATPase_c:197:8.51e-21:304:109:109- Raw architecture: HAMP:10:0.000000000236:79:70:69#HisKA:84:0.0000000000000111:144:61:64#HATPase_c:197:8.51e-21:304:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span248910-250686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_01240RefSeq proteinWP_323465637.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00004Context members
RYX45_RS01240RYX45_RS01245
Partner locus tags
RYX45_RS01240RYX45_RS01245
Partner old locus tags
RYX45_01240RYX45_01245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323465637.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2KSN8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2KSN8_ALKPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS01240Primary locus identifier stored in the genes table.
Old locus tagRYX45_01240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval248 910-249 830 nt921 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span248 910-250 686 ntGCF_032843305::NZ_JAWJAY010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span248 910-250 686 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 910 nt250 686 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS01240GCF_032843305#RYX45_RS01240
HKClassicCurrent focus
248 910-249 830 nt · Reverse (-)
RYX45_RS01245GCF_032843305#RYX45_RS01245
RROmpR
250 006-250 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS01240The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881746
Simplified PFAM architecture for HKOC_2881746
PFAM domain coverage: 224 / 306 aa (73.2%)
1 aa306 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[28-79] | HisKA[84-146] | HATPase_c[196-304]
- Domain count: 3
- Matched identifier: HKOC_2881746
- Positioned domains: HAMP 28-79 ; HisKA 84-146 ; HATPase_c 196-304
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key