1 Response_reg#1
5-116 aa · 112 aa · 49.6% of protein
Raw token
Response_reg:5:3.9e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS01245
Response regulator OmpR family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS01245Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 226 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.5% of protein
Raw token
Trans_reg_C:147:1.43e-31:224:78:77- Raw architecture: Response_reg:5:3.9e-33:116:112:111#Trans_reg_C:147:1.43e-31:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span248910-250686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_01245RefSeq proteinWP_075684101.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00004Context members
RYX45_RS01240RYX45_RS01245
Partner locus tags
RYX45_RS01240RYX45_RS01245
Partner old locus tags
RYX45_01240RYX45_01245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_075684101.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NLD7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NLD7_ALKPSDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS01245Primary locus identifier stored in the genes table.
Old locus tagRYX45_01245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval250 006-250 686 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span248 910-250 686 ntGCF_032843305::NZ_JAWJAY010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span248 910-250 686 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
248 910 nt250 686 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS01240GCF_032843305#RYX45_RS01240
HKClassic
248 910-249 830 nt · Reverse (-)
RYX45_RS01245GCF_032843305#RYX45_RS01245
RROmpRCurrent focus
250 006-250 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001940735#BTR22_RS18415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1416985
Simplified PFAM architecture for RROC_1416985
PFAM domain coverage: 189 / 226 aa (83.6%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-116] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1416985
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_001940735#BTR22_RS18415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key