1 Response_reg#1
19-104 aa · 86 aa · 37.2% of protein
Raw token
Response_reg:19:7.79e-23:104:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS13795
Response regulator, unclassified
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeunclassifiedLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032843305#RYX45_RS13795Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage86 / 231 aa (37.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:19:7.79e-23:104:86:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032843305::NZ_JAWJAY010000003.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span176990-177685Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_13800RefSeq proteinWP_323467058.1
Context group ID
GCF_032843305::NZ_JAWJAY010000003.1::G00030Context members
RYX45_RS13795
Partner locus tags
RYX45_RS13795
Partner old locus tags
RYX45_13800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323467058.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NPS8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NPS8_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS13795Primary locus identifier stored in the genes table.
Old locus tagRYX45_13800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000003.1Sequence record reported by the local genomic context database.
Genomic interval176 990-177 685 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span176 990-177 685 ntGCF_032843305::NZ_JAWJAY010000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000003.1All displayed genes belong to this local TCS context.
Neighborhood span176 990-177 685 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 990 nt177 685 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RYX45_RS13795GCF_032843305#RYX45_RS13795
RRunclassifiedCurrent focus
176 990-177 685 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS13795The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1184810
Simplified PFAM architecture for RROC_1184810
PFAM domain coverage: 89 / 231 aa (38.5%)
1 aa231 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[16-104]
- Domain count: 1
- Matched identifier: RROC_1184810
- Positioned domains: Response_reg 16-104
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS13795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key