1 GAF#1
19-157 aa · 139 aa · 36.8% of protein
Raw token
GAF:19:0.00000000000235:157:140:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS12775
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS12775Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage286 / 378 aa (75.7%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
174-233 aa · 60 aa · 15.9% of protein
Raw token
HisKA_3:174:0.000000000000746:233:62:683 HATPase_c#3
278-364 aa · 87 aa · 23.0% of protein
Raw token
HATPase_c:278:0.000000000000366:364:101:109- Raw architecture: GAF:19:0.00000000000235:157:140:133#HisKA_3:174:0.000000000000746:233:62:68#HATPase_c:278:0.000000000000366:364:101:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span493052-494823Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_12775RefSeq proteinWP_323466942.1
Context group ID
GCF_032843305::NZ_JAWJAY010000002.1::G00029Context members
RYX45_RS12770RYX45_RS12775
Partner locus tags
RYX45_RS12770RYX45_RS12775
Partner old locus tags
RYX45_12770RYX45_12775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466942.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NPI1Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NPI1_ALKPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS12775Primary locus identifier stored in the genes table.
Old locus tagRYX45_12775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000002.1Sequence record reported by the local genomic context database.
Genomic interval493 687-494 823 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span493 052-494 823 ntGCF_032843305::NZ_JAWJAY010000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span493 052-494 823 nt1 772 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
493 052 nt494 823 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS12770GCF_032843305#RYX45_RS12770
RRNarL
493 052-493 690 nt · Reverse (-)
RYX45_RS12775GCF_032843305#RYX45_RS12775
HKClassicCurrent focus
493 687-494 823 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS12775The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2631169
Simplified PFAM architecture for HKOC_2631169
PFAM domain coverage: 294 / 378 aa (77.8%)
1 aa378 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[18-157] | HisKA_3[174-235] | HATPase_c[273-364]
- Domain count: 3
- Matched identifier: HKOC_2631169
- Positioned domains: GAF_2 18-157 ; HisKA_3 174-235 ; HATPase_c 273-364
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS12775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key