1 Response_reg#1
5-115 aa · 111 aa · 46.1% of protein
Raw token
Response_reg:5:1.78e-40:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS12010
Response regulator OmpR family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS12010Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-234 aa · 76 aa · 31.5% of protein
Raw token
Trans_reg_C:159:2.76e-38:234:76:77- Raw architecture: Response_reg:5:1.78e-40:115:111:111#Trans_reg_C:159:2.76e-38:234:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000002.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span331014-333501Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_12010RefSeq proteinWP_323466863.1
Context group ID
GCF_032843305::NZ_JAWJAY010000002.1::G00028Context members
RYX45_RS12005RYX45_RS12010
Partner locus tags
RYX45_RS12005RYX45_RS12010
Partner old locus tags
RYX45_12005RYX45_12010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466863.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NNZ4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NNZ4_ALKPSDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS12010Primary locus identifier stored in the genes table.
Old locus tagRYX45_12010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000002.1Sequence record reported by the local genomic context database.
Genomic interval332 776-333 501 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span331 014-333 501 ntGCF_032843305::NZ_JAWJAY010000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span331 014-333 501 nt2 488 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
331 014 nt333 501 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS12005GCF_032843305#RYX45_RS12005
HKClassic
331 014-332 783 nt · Reverse (-)
RYX45_RS12010GCF_032843305#RYX45_RS12010
RROmpRCurrent focus
332 776-333 501 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS12010The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0875552
Simplified PFAM architecture for RROC_0875552
PFAM domain coverage: 187 / 241 aa (77.6%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[159-234]
- Domain count: 2
- Matched identifier: RROC_0875552
- Positioned domains: Response_reg 5-115 ; Trans_reg_C 159-234
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS12010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key