1 Hpt#1
4-97 aa · 94 aa · 13.5% of protein
Raw token
Hpt:4:1.05e-17:97:94:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS11225
Histidine kinase, CheA
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeCheALength695 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032843305#RYX45_RS11225Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length695 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage422 / 695 aa (60.7%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa695 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
316-375 aa · 60 aa · 8.6% of protein
Raw token
H-kinase_dim:316:6.76e-17:375:67:673 HATPase_c#3
423-562 aa · 140 aa · 20.1% of protein
Raw token
HATPase_c:423:0.00000000000000169:562:140:1094 CheW#4
567-694 aa · 128 aa · 18.4% of protein
Raw token
CheW:567:2.83e-25:694:135:138- Raw architecture: Hpt:4:1.05e-17:97:94:84#H-kinase_dim:316:6.76e-17:375:67:67#HATPase_c:423:0.00000000000000169:562:140:109#CheW:567:2.83e-25:694:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032843305::NZ_JAWJAY010000002.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span160033-162120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_11225RefSeq proteinWP_323466960.1
Context group ID
GCF_032843305::NZ_JAWJAY010000002.1::G00027Context members
RYX45_RS11225
Partner locus tags
RYX45_RS11225
Partner old locus tags
RYX45_11225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466960.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2U215Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2U215_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS11225Primary locus identifier stored in the genes table.
Old locus tagRYX45_11225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000002.1Sequence record reported by the local genomic context database.
Genomic interval160 033-162 120 nt2 088 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span160 033-162 120 ntGCF_032843305::NZ_JAWJAY010000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span160 033-162 120 nt2 088 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 033 nt162 120 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RYX45_RS11225GCF_032843305#RYX45_RS11225
HKCheACurrent focus
160 033-162 120 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS11225The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0781643
Simplified PFAM architecture for HKOC_0781643
PFAM domain coverage: 508 / 695 aa (73.1%)
1 aa695 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[174-254] | H-kinase_dim[316-375] | HATPase_c[423-562] | CheW[568-694]
- Domain count: 5
- Matched identifier: HKOC_0781643
- Positioned domains: Hpt 4-103 ; P2 174-254 ; H-kinase_dim 316-375 ; HATPase_c 423-562 ; CheW 568-694
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS11225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key