1 SBP_bac_3#1
27-243 aa · 217 aa · 32.9% of protein
Raw token
SBP_bac_3:27:2.34e-43:243:224:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS11115
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength660 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS11115Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3PAS_9HisKAHATPase_c
Protein length660 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage495 / 660 aa (75.0%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa660 aa
Domain-by-domain annotation4 items
2 PAS_9#2
320-421 aa · 102 aa · 15.5% of protein
Raw token
PAS_9:320:0.000000000234:421:111:1023 HisKA#3
437-499 aa · 63 aa · 9.5% of protein
Raw token
HisKA:437:0.0000000000152:499:63:644 HATPase_c#4
544-656 aa · 113 aa · 17.1% of protein
Raw token
HATPase_c:544:9.46e-22:656:116:109- Raw architecture: SBP_bac_3:27:2.34e-43:243:224:224#PAS_9:320:0.000000000234:421:111:102#HisKA:437:0.0000000000152:499:63:64#HATPase_c:544:9.46e-22:656:116:109
- Domain description: 1 SBP_bac_3,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135905-139245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_11115RefSeq proteinWP_323466791.1
Context group ID
GCF_032843305::NZ_JAWJAY010000002.1::G00025Context members
RYX45_RS11110RYX45_RS11115
Partner locus tags
RYX45_RS11110RYX45_RS11115
Partner old locus tags
RYX45_11110RYX45_11115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466791.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NNP3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NNP3_ALKPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS11115Primary locus identifier stored in the genes table.
Old locus tagRYX45_11115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000002.1Sequence record reported by the local genomic context database.
Genomic interval137 263-139 245 nt1 983 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span135 905-139 245 ntGCF_032843305::NZ_JAWJAY010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span135 905-139 245 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 905 nt139 245 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS11110GCF_032843305#RYX45_RS11110
RRNtrC
135 905-137 266 nt · Reverse (-)
RYX45_RS11115GCF_032843305#RYX45_RS11115
HKClassicCurrent focus
137 263-139 245 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS11115The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0873578
Simplified PFAM architecture for HKOC_0873578
PFAM domain coverage: 500 / 660 aa (75.8%)
1 aa660 aa
SBP_bac_3PAS_4HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + PAS_4 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[27-243] | PAS_4[316-424] | HisKA[438-500] | HATPase_c[546-656]
- Domain count: 4
- Matched identifier: HKOC_0873578
- Positioned domains: SBP_bac_3 27-243 ; PAS_4 316-424 ; HisKA 438-500 ; HATPase_c 546-656
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS11115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key