1 Response_reg#1
4-113 aa · 110 aa · 24.3% of protein
Raw token
Response_reg:4:5.23e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS11110
Response regulator NtrC family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeNtrCLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS11110Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 453 aa (59.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation3 items
2 AAA_5#2
164-282 aa · 119 aa · 26.3% of protein
Raw token
AAA_5:164:0.000000195:282:125:1353 HTH_8#3
409-448 aa · 40 aa · 8.8% of protein
Raw token
HTH_8:409:0.000000000108:448:40:40- Raw architecture: Response_reg:4:5.23e-28:113:111:111#AAA_5:164:0.000000195:282:125:135#HTH_8:409:0.000000000108:448:40:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span135905-139245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_11110RefSeq proteinWP_323466790.1
Context group ID
GCF_032843305::NZ_JAWJAY010000002.1::G00025Context members
RYX45_RS11110RYX45_RS11115
Partner locus tags
RYX45_RS11110RYX45_RS11115
Partner old locus tags
RYX45_11110RYX45_11115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466790.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NNN4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NNN4_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS11110Primary locus identifier stored in the genes table.
Old locus tagRYX45_11110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000002.1Sequence record reported by the local genomic context database.
Genomic interval135 905-137 266 nt1 362 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span135 905-139 245 ntGCF_032843305::NZ_JAWJAY010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000002.1All displayed genes belong to this local TCS context.
Neighborhood span135 905-139 245 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 905 nt139 245 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS11110GCF_032843305#RYX45_RS11110
RRNtrCCurrent focus
135 905-137 266 nt · Reverse (-)
RYX45_RS11115GCF_032843305#RYX45_RS11115
HKClassic
137 263-139 245 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS11110The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0276794
Simplified PFAM architecture for RROC_0276794
PFAM domain coverage: 400 / 453 aa (88.3%)
1 aa453 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[4-112] | Sigma54_activat[141-308] | AAA_lid_14[313-393] | HTH_8[407-448]
- Domain count: 4
- Matched identifier: RROC_0276794
- Positioned domains: Response_reg 4-112 ; Sigma54_activat 141-308 ; AAA_lid_14 313-393 ; HTH_8 407-448
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS11110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key