1 PAS#1
170-266 aa · 97 aa · 15.5% of protein
Raw token
PAS:170:0.00000000818:266:101:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS10015
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength624 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032843305#RYX45_RS10015Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length624 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 624 aa (59.0%)Merged over positioned domains only.
Domain description2 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa624 aa
Domain-by-domain annotation4 items
2 PAS#2
284-394 aa · 111 aa · 17.8% of protein
Raw token
PAS:284:0.0000000000000766:394:111:1133 HisKA#3
414-471 aa · 58 aa · 9.3% of protein
Raw token
HisKA:414:0.00000000000125:471:61:644 HATPase_c#4
515-616 aa · 102 aa · 16.3% of protein
Raw token
HATPase_c:515:2.21e-25:616:105:109- Raw architecture: PAS:170:0.00000000818:266:101:113#PAS:284:0.0000000000000766:394:111:113#HisKA:414:0.00000000000125:471:61:64#HATPase_c:515:2.21e-25:616:105:109
- Domain description: 2 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032843305::NZ_JAWJAY010000001.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1901932-1903806Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_10015RefSeq proteinWP_323466656.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00022Context members
RYX45_RS10015
Partner locus tags
RYX45_RS10015
Partner old locus tags
RYX45_10015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466656.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2U1J9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2U1J9_ALKPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS10015Primary locus identifier stored in the genes table.
Old locus tagRYX45_10015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 901 932-1 903 806 nt1 875 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 901 932-1 903 806 ntGCF_032843305::NZ_JAWJAY010000001.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 901 932-1 903 806 nt1 875 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 901 932 nt1 903 806 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RYX45_RS10015GCF_032843305#RYX45_RS10015
HKClassicCurrent focus
1 901 932-1 903 806 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS10015The current gene is the representative for this cluster.
PFAM architecturePAS_4 + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0963308
Simplified PFAM architecture for HKOC_0963308
PFAM domain coverage: 370 / 624 aa (59.3%)
1 aa624 aa
PAS_4PASHisKAHATPase_c
- Simplified architecture: PAS_4 + PAS + HisKA + HATPase_c
- Raw architecture: PAS_4[166-264] | PAS[283-394] | HisKA[414-470] | HATPase_c[515-616]
- Domain count: 4
- Matched identifier: HKOC_0963308
- Positioned domains: PAS_4 166-264 ; PAS 283-394 ; HisKA 414-470 ; HATPase_c 515-616
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS10015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key