1 Response_reg#1
5-116 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:5:1.49e-35:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS08715
Response regulator, CheY family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032843305#RYX45_RS08715Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.49e-35:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032843305::NZ_JAWJAY010000001.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1645871-1646233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_08715RefSeq proteinWP_075682663.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00021Context members
RYX45_RS08715
Partner locus tags
RYX45_RS08715
Partner old locus tags
RYX45_08715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_075682663.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NMU6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NMU6_ALKPSDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS08715Primary locus identifier stored in the genes table.
Old locus tagRYX45_08715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 645 871-1 646 233 nt363 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 645 871-1 646 233 ntGCF_032843305::NZ_JAWJAY010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 645 871-1 646 233 nt363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 645 871 nt1 646 233 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RYX45_RS08715GCF_032843305#RYX45_RS08715
RRCheYCurrent focus
1 645 871-1 646 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001940735#BTR22_RS08420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2437095
Simplified PFAM architecture for RROC_2437095
PFAM domain coverage: 112 / 120 aa (93.3%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2437095
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_001940735#BTR22_RS08420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key