1 CheW#1
17-152 aa · 136 aa · 45.5% of protein
Raw token
CheW:17:6.2e-38:152:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS07940
Response regulator CheV family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeCheVLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032843305#RYX45_RS07940Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 299 aa (85.6%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 Response_reg#2
176-295 aa · 120 aa · 40.1% of protein
Raw token
Response_reg:176:1.2e-22:295:121:111- Raw architecture: CheW:17:6.2e-38:152:137:138#Response_reg:176:1.2e-22:295:121:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032843305::NZ_JAWJAY010000001.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1492374-1493273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_07940RefSeq proteinWP_323466497.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00019Context members
RYX45_RS07940
Partner locus tags
RYX45_RS07940
Partner old locus tags
RYX45_07940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466497.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NL85Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NL85_ALKPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS07940Primary locus identifier stored in the genes table.
Old locus tagRYX45_07940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 492 374-1 493 273 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 492 374-1 493 273 ntGCF_032843305::NZ_JAWJAY010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 492 374-1 493 273 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 492 374 nt1 493 273 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RYX45_RS07940GCF_032843305#RYX45_RS07940
RRCheVCurrent focus
1 492 374-1 493 273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS07940The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0575942
Simplified PFAM architecture for RROC_0575942
PFAM domain coverage: 253 / 299 aa (84.6%)
1 aa299 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[17-150] | Response_reg[176-294]
- Domain count: 2
- Matched identifier: RROC_0575942
- Positioned domains: CheW 17-150 ; Response_reg 176-294
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS07940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key