1 MEDS#1
24-173 aa · 150 aa · 26.1% of protein
Raw token
MEDS:24:1.54e-23:173:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS06905
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS06905Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
MEDSHisKAHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage311 / 574 aa (54.2%)Merged over positioned domains only.
Domain description1 MEDS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation3 items
2 HisKA#2
362-418 aa · 57 aa · 9.9% of protein
Raw token
HisKA:362:0.00000000000529:418:58:643 HATPase_c#3
467-570 aa · 104 aa · 18.1% of protein
Raw token
HATPase_c:467:5.4e-31:570:107:109- Raw architecture: MEDS:24:1.54e-23:173:156:160#HisKA:362:0.00000000000529:418:58:64#HATPase_c:467:5.4e-31:570:107:109
- Domain description: 1 MEDS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00016
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span1293682-1297453Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_06905RefSeq proteinWP_323466334.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00016Context members
RYX45_RS06905RYX45_RS06910
Partner locus tags
RYX45_RS06905RYX45_RS06910
Partner old locus tags
RYX45_06905RYX45_06910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466334.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NKT3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NKT3_ALKPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS06905Primary locus identifier stored in the genes table.
Old locus tagRYX45_06905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 293 682-1 295 406 nt1 725 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 293 682-1 297 453 ntGCF_032843305::NZ_JAWJAY010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 293 682-1 297 453 nt3 772 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 293 682 nt1 297 453 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS06905GCF_032843305#RYX45_RS06905
HKClassicCurrent focus
1 293 682-1 295 406 nt · Forward (+)
RYX45_RS06910GCF_032843305#RYX45_RS06910
HKClassic
1 295 687-1 297 453 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS06905The current gene is the representative for this cluster.
PFAM architectureMEDS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1195989
Simplified PFAM architecture for HKOC_1195989
PFAM domain coverage: 312 / 574 aa (54.4%)
1 aa574 aa
MEDSHisKAHATPase_c
- Simplified architecture: MEDS + HisKA + HATPase_c
- Raw architecture: MEDS[24-173] | HisKA[362-420] | HATPase_c[467-569]
- Domain count: 3
- Matched identifier: HKOC_1195989
- Positioned domains: MEDS 24-173 ; HisKA 362-420 ; HATPase_c 467-569
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS06905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key