1 Response_reg#1
4-116 aa · 113 aa · 53.8% of protein
Raw token
Response_reg:4:1.14e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS06605
Response regulator NarL family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeNarLLength210 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS06605Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 210 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
147-204 aa · 58 aa · 27.6% of protein
Raw token
HTH_LUXR:147:3.01e-20:204:58:58- Raw architecture: Response_reg:4:1.14e-28:116:113:111#HTH_LUXR:147:3.01e-20:204:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1228273-1230031Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_06605RefSeq proteinWP_323466286.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00015Context members
RYX45_RS06605RYX45_RS06610
Partner locus tags
RYX45_RS06605RYX45_RS06610
Partner old locus tags
RYX45_06605RYX45_06610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323466286.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NKR4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NKR4_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS06605Primary locus identifier stored in the genes table.
Old locus tagRYX45_06605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 228 273-1 228 905 nt633 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 228 273-1 230 031 ntGCF_032843305::NZ_JAWJAY010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 228 273-1 230 031 nt1 759 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 228 273 nt1 230 031 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS06605GCF_032843305#RYX45_RS06605
RRNarLCurrent focus
1 228 273-1 228 905 nt · Reverse (-)
RYX45_RS06610GCF_032843305#RYX45_RS06610
HKClassic
1 228 907-1 230 031 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS06605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2033445
Simplified PFAM architecture for RROC_2033445
PFAM domain coverage: 168 / 210 aa (80.0%)
1 aa210 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[150-204]
- Domain count: 2
- Matched identifier: RROC_2033445
- Positioned domains: Response_reg 4-116 ; GerE 150-204
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS06605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key