1 HAMP#1
177-246 aa · 70 aa · 11.7% of protein
Raw token
HAMP:177:7.06e-16:246:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS03640
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS03640Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPPASHisKAHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage350 / 599 aa (58.4%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 PAS#2
256-357 aa · 102 aa · 17.0% of protein
Raw token
PAS:256:0.00000434:357:116:1133 HisKA#3
367-433 aa · 67 aa · 11.2% of protein
Raw token
HisKA:367:2.58e-18:433:67:644 HATPase_c#4
480-590 aa · 111 aa · 18.5% of protein
Raw token
HATPase_c:480:1.58e-33:590:111:109- Raw architecture: HAMP:177:7.06e-16:246:70:69#PAS:256:0.00000434:357:116:113#HisKA:367:2.58e-18:433:67:64#HATPase_c:480:1.58e-33:590:111:109
- Domain description: 1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span676265-678780Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_03635RefSeq proteinWP_075683539.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00012Context members
RYX45_RS03635RYX45_RS03640
Partner locus tags
RYX45_RS03635RYX45_RS03640
Partner old locus tags
RYX45_03630RYX45_03635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_075683539.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NKG6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NKG6_ALKPSDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS03640Primary locus identifier stored in the genes table.
Old locus tagRYX45_03635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval676 981-678 780 nt1 800 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span676 265-678 780 ntGCF_032843305::NZ_JAWJAY010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span676 265-678 780 nt2 516 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
676 265 nt678 780 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS03635GCF_032843305#RYX45_RS03635
RROmpR
676 265-676 981 nt · Forward (+)
RYX45_RS03640GCF_032843305#RYX45_RS03640
HKClassicCurrent focus
676 981-678 780 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001940735#BTR22_RS14020Use this link to inspect the representative gene detail.
PFAM architectureHisK_sensor + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1057972
Simplified PFAM architecture for HKOC_1057972
PFAM domain coverage: 459 / 599 aa (76.6%)
1 aa599 aa
HisK_sensorHAMPPASHisKAHATPase_c
- Simplified architecture: HisK_sensor + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HisK_sensor[37-164] | HAMP[194-245] | PAS[256-357] | HisKA[367-433] | HATPase_c[480-589]
- Domain count: 5
- Matched identifier: HKOC_1057972
- Positioned domains: HisK_sensor 37-164 ; HAMP 194-245 ; PAS 256-357 ; HisKA 367-433 ; HATPase_c 480-589
Cluster members and taxonomy
Representative gene: GCF_001940735#BTR22_RS14020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key