1 HAMP#1
190-259 aa · 70 aa · 7.3% of protein
Raw token
HAMP:190:0.000000000358:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS03110
Histidine kinase, Hybrid
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeHybridLength960 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS03110Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_cResponse_reg
Protein length960 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 960 aa (38.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa960 aa
Domain-by-domain annotation4 items
2 HisKA#2
581-647 aa · 67 aa · 7.0% of protein
Raw token
HisKA:581:3.5e-20:647:67:643 HATPase_c#3
691-801 aa · 111 aa · 11.6% of protein
Raw token
HATPase_c:691:2.09e-33:801:111:1094 Response_reg#4
818-938 aa · 121 aa · 12.6% of protein
Raw token
Response_reg:818:0.000000000422:938:123:111- Raw architecture: HAMP:190:0.000000000358:259:70:69#HisKA:581:3.5e-20:647:67:64#HATPase_c:691:2.09e-33:801:111:109#Response_reg:818:0.000000000422:938:123:111
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span577286-580523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_03105RefSeq proteinWP_323465839.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00011Context members
RYX45_RS03105RYX45_RS03110
Partner locus tags
RYX45_RS03105RYX45_RS03110
Partner old locus tags
RYX45_03100RYX45_03105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323465839.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2NKE4Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2NKE4_ALKPSDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS03110Primary locus identifier stored in the genes table.
Old locus tagRYX45_03105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval577 641-580 523 nt2 883 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span577 286-580 523 ntGCF_032843305::NZ_JAWJAY010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span577 286-580 523 nt3 238 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
577 286 nt580 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS03105GCF_032843305#RYX45_RS03105
RRCheY
577 286-577 648 nt · Forward (+)
RYX45_RS03110GCF_032843305#RYX45_RS03110
HKHybridCurrent focus
577 641-580 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS03110The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0318125
Simplified PFAM architecture for HKOC_0318125
PFAM domain coverage: 300 / 960 aa (31.3%)
1 aa960 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[581-647] | HATPase_c[691-802] | Response_reg[818-938]
- Domain count: 3
- Matched identifier: HKOC_0318125
- Positioned domains: HisKA 581-647 ; HATPase_c 691-802 ; Response_reg 818-938
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS03110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key