1 GAF#1
38-175 aa · 138 aa · 31.4% of protein
Raw token
GAF:38:0.000000000000353:175:140:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS01680
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032843305#RYX45_RS01680Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage315 / 439 aa (71.8%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HisKA#2
211-279 aa · 69 aa · 15.7% of protein
Raw token
HisKA:211:5.52e-17:279:69:643 HATPase_c#3
328-435 aa · 108 aa · 24.6% of protein
Raw token
HATPase_c:328:7.7e-32:435:108:109- Raw architecture: GAF:38:0.000000000000353:175:140:133#HisKA:211:5.52e-17:279:69:64#HATPase_c:328:7.7e-32:435:108:109
- Domain description: 1 GAF,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032843305::NZ_JAWJAY010000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span311284-312603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_01675RefSeq proteinWP_323465714.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00006Context members
RYX45_RS01680
Partner locus tags
RYX45_RS01680
Partner old locus tags
RYX45_01675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323465714.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2KS40Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2KS40_ALKPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS01680Primary locus identifier stored in the genes table.
Old locus tagRYX45_01675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval311 284-312 603 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span311 284-312 603 ntGCF_032843305::NZ_JAWJAY010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span311 284-312 603 nt1 320 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
311 284 nt312 603 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
RYX45_RS01680GCF_032843305#RYX45_RS01680
HKClassicCurrent focus
311 284-312 603 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036541085#V2B38_RS05785Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1485172
Simplified PFAM architecture for HKOC_1485172
PFAM domain coverage: 316 / 499 aa (63.3%)
1 aa499 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[98-235] | HisKA[271-339] | HATPase_c[388-496]
- Domain count: 3
- Matched identifier: HKOC_1485172
- Positioned domains: GAF 98-235 ; HisKA 271-339 ; HATPase_c 388-496
Cluster members and taxonomy
Representative gene: GCF_036541085#V2B38_RS05785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key