1 Response_reg#1
7-116 aa · 110 aa · 45.1% of protein
Raw token
Response_reg:7:8.82e-22:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS01630
Response regulator LytTR family
Alkalihalophilus pseudofirmus · GCF_032843305
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS01630Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 244 aa (84.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-244 aa · 96 aa · 39.3% of protein
Raw token
LytTR:149:2.11e-18:244:97:98- Raw architecture: Response_reg:7:8.82e-22:116:115:111#LytTR:149:2.11e-18:244:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span298515-302279Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_01625RefSeq proteinWP_323465705.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00005Context members
RYX45_RS01625RYX45_RS01630
Partner locus tags
RYX45_RS01625RYX45_RS01630
Partner old locus tags
RYX45_01620RYX45_01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323465705.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2KSS0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2KSS0_ALKPSDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS01630Primary locus identifier stored in the genes table.
Old locus tagRYX45_01625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval301 545-302 279 nt735 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span298 515-302 279 ntGCF_032843305::NZ_JAWJAY010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span298 515-302 279 nt3 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
298 515 nt302 279 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS01625GCF_032843305#RYX45_RS01625
HKClassic
298 515-301 499 nt · Forward (+)
RYX45_RS01630GCF_032843305#RYX45_RS01630
RRLytTRCurrent focus
301 545-302 279 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS01630The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0818194
Simplified PFAM architecture for RROC_0818194
PFAM domain coverage: 205 / 244 aa (84.0%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-116] | LytTR[149-243]
- Domain count: 2
- Matched identifier: RROC_0818194
- Positioned domains: Response_reg 7-116 ; LytTR 149-243
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS01630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key