1 HAMP#1
161-231 aa · 71 aa · 15.2% of protein
Raw token
HAMP:161:0.0000000151:231:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
RYX45_RS00640
Histidine kinase, Classic
Alkalihalophilus pseudofirmus · GCF_032843305
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032843305#RYX45_RS00640Stable P2CS identifier used across views.
GenomeGCF_032843305Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Alkalihalophilus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 468 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-296 aa · 61 aa · 13.0% of protein
Raw token
HisKA:236:4.65e-20:296:61:643 HATPase_c#3
345-468 aa · 124 aa · 26.5% of protein
Raw token
HATPase_c:345:5.23e-28:468:125:109- Raw architecture: HAMP:161:0.0000000151:231:71:69#HisKA:236:4.65e-20:296:61:64#HATPase_c:345:5.23e-28:468:125:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032843305::NZ_JAWJAY010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span131505-133638Genomic interval covered by the local TCS group.
Identifiers
Old locus tagRYX45_00640RefSeq proteinWP_323465573.1
Context group ID
GCF_032843305::NZ_JAWJAY010000001.1::G00002Context members
RYX45_RS00635RYX45_RS00640
Partner locus tags
RYX45_RS00635RYX45_RS00640
Partner old locus tags
RYX45_00635RYX45_00640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_323465573.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ2KSH3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ2KSH3_ALKPSDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagRYX45_RS00640Primary locus identifier stored in the genes table.
Old locus tagRYX45_00640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWJAY010000001.1Sequence record reported by the local genomic context database.
Genomic interval132 232-133 638 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span131 505-133 638 ntGCF_032843305::NZ_JAWJAY010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032843305::NZ_JAWJAY010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWJAY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span131 505-133 638 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 505 nt133 638 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
RYX45_RS00635GCF_032843305#RYX45_RS00635
RROmpR
131 505-132 245 nt · Forward (+)
RYX45_RS00640GCF_032843305#RYX45_RS00640
HKClassicCurrent focus
132 232-133 638 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032843305#RYX45_RS00640The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1744105
Simplified PFAM architecture for HKOC_1744105
PFAM domain coverage: 237 / 468 aa (50.6%)
1 aa468 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-230] | HisKA[236-296] | HATPase_c[345-467]
- Domain count: 3
- Matched identifier: HKOC_1744105
- Positioned domains: HAMP 178-230 ; HisKA 236-296 ; HATPase_c 345-467
Cluster members and taxonomy
Representative gene: GCF_032843305#RYX45_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 79 885 · GCF_032843305
AssemblyASM3284330v1 · Contighaploid
Genome composition4 368 590 bp · 40,0% GCAlkalihalophilus pseudofirmus
Signal transduction countsGenes 76 · HK 39 · RR 36CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusAlkalihalophilus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Alkalihalophilus
Related genes
Preview from the same derived genome key