1 Response_reg#1
4-124 aa · 121 aa · 49.6% of protein
Raw token
Response_reg:4:0.000000000031:124:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X55_RS09550
Response regulator LytTR family
Streptococcus sp. · GCF_032550095
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032550095#E6X55_RS09550Stable P2CS identifier used across views.
GenomeGCF_032550095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage216 / 244 aa (88.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-243 aa · 95 aa · 38.9% of protein
Raw token
LytTR:149:4.69e-22:243:100:98- Raw architecture: Response_reg:4:0.000000000031:124:121:111#LytTR:149:4.69e-22:243:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032550095::NZ_JAWGAB010000033.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6217-6951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X55_09540RefSeq proteinWP_008533929.1
Context group ID
GCF_032550095::NZ_JAWGAB010000033.1::G00010Context members
E6X55_RS09550
Partner locus tags
E6X55_RS09550
Partner old locus tags
E6X55_09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_008533929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X55_RS09550Primary locus identifier stored in the genes table.
Old locus tagE6X55_09540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGAB010000033.1Sequence record reported by the local genomic context database.
Genomic interval6 217-6 951 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 217-6 951 ntGCF_032550095::NZ_JAWGAB010000033.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550095::NZ_JAWGAB010000033.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGAB010000033.1All displayed genes belong to this local TCS context.
Neighborhood span6 217-6 951 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 217 nt6 951 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6X55_RS09550GCF_032550095#E6X55_RS09550
RRLytTRCurrent focus
6 217-6 951 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000187445#HMPREF0848_RS00455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0806204
Simplified PFAM architecture for RROC_0806204
PFAM domain coverage: 201 / 244 aa (82.4%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-123] | LytTR[150-242]
- Domain count: 2
- Matched identifier: RROC_0806204
- Positioned domains: Response_reg 16-123 ; Response_reg 16-123 ; LytTR 150-242 ; LytTR 150-242
Cluster members and taxonomy
Representative gene: GCF_000187445#HMPREF0848_RS00455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032550095
AssemblyASM3255009v1 · Scaffoldhaploid
Genome composition2 064 916 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 26 · HK 13 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key