1 Response_reg#1
4-123 aa · 120 aa · 49.0% of protein
Raw token
Response_reg:4:0.00000011:123:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X55_RS08360
Response regulator LytTR family
Streptococcus sp. · GCF_032550095
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032550095#E6X55_RS08360Stable P2CS identifier used across views.
GenomeGCF_032550095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 245 aa (85.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-243 aa · 90 aa · 36.7% of protein
Raw token
LytTR:154:3.73e-21:243:95:98- Raw architecture: Response_reg:4:0.00000011:123:120:111#LytTR:154:3.73e-21:243:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032550095::NZ_JAWGAB010000023.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21140-21877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X55_08350RefSeq proteinWP_002887713.1
Context group ID
GCF_032550095::NZ_JAWGAB010000023.1::G00003Context members
E6X55_RS08360
Partner locus tags
E6X55_RS08360
Partner old locus tags
E6X55_08350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002887713.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X55_RS08360Primary locus identifier stored in the genes table.
Old locus tagE6X55_08350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGAB010000023.1Sequence record reported by the local genomic context database.
Genomic interval21 140-21 877 nt738 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 140-21 877 ntGCF_032550095::NZ_JAWGAB010000023.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550095::NZ_JAWGAB010000023.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGAB010000023.1All displayed genes belong to this local TCS context.
Neighborhood span21 140-21 877 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 140 nt21 877 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E6X55_RS08360GCF_032550095#E6X55_RS08360
RRLytTRCurrent focus
21 140-21 877 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018382235#KH076_RS05000Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0797111
Simplified PFAM architecture for RROC_0797111
PFAM domain coverage: 210 / 245 aa (85.7%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[152-242]
- Domain count: 2
- Matched identifier: RROC_0797111
- Positioned domains: Response_reg 4-122 ; LytTR 152-242
Cluster members and taxonomy
Representative gene: GCF_018382235#KH076_RS05000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032550095
AssemblyASM3255009v1 · Scaffoldhaploid
Genome composition2 064 916 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 26 · HK 13 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key