1 Response_reg#1
5-115 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:5:5.02e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HSISS2_RS06360
Response regulator OmpR family
Streptococcus sp. HSISS2 · GCF_000448665
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448665#HSISS2_RS06360Stable P2CS identifier used across views.
GenomeGCF_000448665Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 228 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-209 aa · 63 aa · 27.6% of protein
Raw token
Trans_reg_C:147:6.24e-19:209:63:77- Raw architecture: Response_reg:5:5.02e-35:115:111:111#Trans_reg_C:147:6.24e-19:209:63:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448665::NZ_CM002133.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1435425-1436111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHSISS2_254RefSeq proteinWP_004183958.1
Context group ID
GCF_000448665::NZ_CM002133.1::G00007Context members
HSISS2_RS06360
Partner locus tags
HSISS2_RS06360
Partner old locus tags
HSISS2_254
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004183958.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHSISS2_RS06360Primary locus identifier stored in the genes table.
Old locus tagHSISS2_254Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CM002133.1Sequence record reported by the local genomic context database.
Genomic interval1 435 425-1 436 111 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 435 425-1 436 111 ntGCF_000448665::NZ_CM002133.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448665::NZ_CM002133.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CM002133.1All displayed genes belong to this local TCS context.
Neighborhood span1 435 425-1 436 111 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 435 425 nt1 436 111 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HSISS2_RS06360GCF_000448665#HSISS2_RS06360
RROmpRCurrent focus
1 435 425-1 436 111 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448665#HSISS2_RS06360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304780
Simplified PFAM architecture for RROC_1304780
PFAM domain coverage: 171 / 228 aa (75.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-207]
- Domain count: 2
- Matched identifier: RROC_1304780
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-207 ; Trans_reg_C 147-207
Cluster members and taxonomy
Representative gene: GCF_000448665#HSISS2_RS06360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 316 411 · GCF_000448665
AssemblyHSISS2_1.0 · Chromosomehaploid
Genome composition2 360 910 bp · 40,0% GCStreptococcus sp. HSISS2
Signal transduction countsGenes 19 · HK 7 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key