1 HAMP#1
156-225 aa · 70 aa · 15.3% of protein
Raw token
HAMP:156:0.000000844:225:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E6X55_RS02255
Histidine kinase, Classic
Streptococcus sp. · GCF_032550095
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032550095#E6X55_RS02255Stable P2CS identifier used across views.
GenomeGCF_032550095Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 458 aa (52.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-297 aa · 61 aa · 13.3% of protein
Raw token
HisKA:237:0.0000000306:297:61:643 HATPase_c#3
349-458 aa · 110 aa · 24.0% of protein
Raw token
HATPase_c:349:7.26e-21:458:110:109- Raw architecture: HAMP:156:0.000000844:225:70:69#HisKA:237:0.0000000306:297:61:64#HATPase_c:349:7.26e-21:458:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032550095::NZ_JAWGAB010000003.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103313-105339Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE6X55_02255RefSeq proteinWP_081102577.1
Context group ID
GCF_032550095::NZ_JAWGAB010000003.1::G00006Context members
E6X55_RS02255E6X55_RS02260
Partner locus tags
E6X55_RS02255E6X55_RS02260
Partner old locus tags
E6X55_02255E6X55_02260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081102577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE6X55_RS02255Primary locus identifier stored in the genes table.
Old locus tagE6X55_02255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWGAB010000003.1Sequence record reported by the local genomic context database.
Genomic interval103 313-104 689 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 313-105 339 ntGCF_032550095::NZ_JAWGAB010000003.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032550095::NZ_JAWGAB010000003.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWGAB010000003.1All displayed genes belong to this local TCS context.
Neighborhood span103 313-105 339 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 313 nt105 339 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E6X55_RS02255GCF_032550095#E6X55_RS02255
HKClassicCurrent focus
103 313-104 689 nt · Reverse (-)
E6X55_RS02260GCF_032550095#E6X55_RS02260
RROmpR
104 680-105 339 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018380735#KH151_RS01245Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1865683
Simplified PFAM architecture for HKOC_1865683
PFAM domain coverage: 171 / 458 aa (37.3%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-297] | HATPase_c[349-458]
- Domain count: 2
- Matched identifier: HKOC_1865683
- Positioned domains: HisKA 237-297 ; HATPase_c 349-458
Cluster members and taxonomy
Representative gene: GCF_018380735#KH151_RS01245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 306 · GCF_032550095
AssemblyASM3255009v1 · Scaffoldhaploid
Genome composition2 064 916 bp · 40,0% GCStreptococcus sp.
Signal transduction countsGenes 26 · HK 13 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key