1 Response_reg#1
6-119 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:6:1.28e-30:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS14925
Response regulator, unclassified
Clostridium sp. · GCF_032480055
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032480055#E7D95_RS14925Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 532 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
438-480 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:438:0.0000000669:480:43:423 HTH_AraC#3
500-530 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:500:0.000000166:530:31:42- Raw architecture: Response_reg:6:1.28e-30:119:114:111#HTH_AraC:438:0.0000000669:480:43:42#HTH_AraC:500:0.000000166:530:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032480055::NZ_JAWEVO010000037.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10799-14191Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_14930RefSeq proteinWP_099329258.1
Context group ID
GCF_032480055::NZ_JAWEVO010000037.1::G00035Context members
E7D95_RS14920E7D95_RS14925
Partner locus tags
E7D95_RS14920E7D95_RS14925
Partner old locus tags
E7D95_14925E7D95_14930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099329258.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS14925Primary locus identifier stored in the genes table.
Old locus tagE7D95_14930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000037.1Sequence record reported by the local genomic context database.
Genomic interval12 593-14 191 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 799-14 191 ntGCF_032480055::NZ_JAWEVO010000037.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000037.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000037.1All displayed genes belong to this local TCS context.
Neighborhood span10 799-14 191 nt3 393 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 799 nt14 191 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E7D95_RS14920GCF_032480055#E7D95_RS14920
HKClassic
10 799-12 583 nt · Reverse (-)
E7D95_RS14925GCF_032480055#E7D95_RS14925
RRunclassifiedCurrent focus
12 593-14 191 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015556595#I2F84_RS12275Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108625
Simplified PFAM architecture for RROC_0108625
PFAM domain coverage: 319 / 532 aa (60.0%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[165-292] | HTH_18[453-530]
- Domain count: 3
- Matched identifier: RROC_0108625
- Positioned domains: Response_reg 6-118 ; GGDEF_2 165-292 ; HTH_18 453-530
Cluster members and taxonomy
Representative gene: GCF_015556595#I2F84_RS12275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key