1 Response_reg#1
8-122 aa · 115 aa · 42.6% of protein
Raw token
Response_reg:8:3.23e-27:122:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E7D95_RS01200
Response regulator Spo0A family
Clostridium sp. · GCF_032480055
ClassRRTypeSpo0ALength270 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032480055#E7D95_RS01200Stable P2CS identifier used across views.
GenomeGCF_032480055Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length270 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 270 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa270 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
160-263 aa · 104 aa · 38.5% of protein
Raw token
Spo0A_C:160:1.17e-65:263:104:104- Raw architecture: Response_reg:8:3.23e-27:122:115:111#Spo0A_C:160:1.17e-65:263:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032480055::NZ_JAWEVO010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span235663-236475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE7D95_01200RefSeq proteinWP_049179126.1
Context group ID
GCF_032480055::NZ_JAWEVO010000001.1::G00002Context members
E7D95_RS01200
Partner locus tags
E7D95_RS01200
Partner old locus tags
E7D95_01200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_049179126.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE7D95_RS01200Primary locus identifier stored in the genes table.
Old locus tagE7D95_01200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAWEVO010000001.1Sequence record reported by the local genomic context database.
Genomic interval235 663-236 475 nt813 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span235 663-236 475 ntGCF_032480055::NZ_JAWEVO010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032480055::NZ_JAWEVO010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWEVO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span235 663-236 475 nt813 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
235 663 nt236 475 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E7D95_RS01200GCF_032480055#E7D95_RS01200
RRSpo0ACurrent focus
235 663-236 475 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003284655#DR013_RS01755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0615019
Simplified PFAM architecture for RROC_0615019
PFAM domain coverage: 218 / 270 aa (80.7%)
1 aa270 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[8-121] | Spo0A_C[160-263]
- Domain count: 2
- Matched identifier: RROC_0615019
- Positioned domains: Response_reg 8-121 ; Response_reg 8-121 ; Spo0A_C 160-263 ; Spo0A_C 160-263
Cluster members and taxonomy
Representative gene: GCF_003284655#DR013_RS01755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 506 · GCF_032480055
AssemblyASM3248005v1 · Contighaploid
Genome composition3 610 104 bp · 30,0% GCClostridium sp.
Signal transduction countsGenes 75 · HK 39 · RR 34CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key